rs3155164 SNP Detail

Summary

• ID
  rs3155164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104195645 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGAG ACCGCCAGAA AAGAGGCAGC
  R
  AGATTTTCTC AAGAAAGAAT GTTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss38743882	mCV24643382	ABI	CRAMUS_MOUSE	r	SNP	C	T	C
ss132753563	ENSMUSSNP5310164	ENSEMBL	ENSEMBL_Sanger	r	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs3155164					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104195645 () rs orientation: reverse

Symbol	Name	Function Class
Mapt	microtubule-associated protein tau	within coordinates
Rr386615	regulatory region 386615	within coordinates
Rr457784	regulatory region 457784	1090 bp distal
Tssr3696	transcription start site region 3696	1898 bp upstream
Tssr105381	transcription start site region 105381	1821 bp upstream
Tssr105382	transcription start site region 105382	1868 bp upstream