rs31551893 SNP Detail

Summary

• ID
  rs31551893
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78453727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAGCCTA ATGGCAGGAG
  TCATTCATGC TTTGTGTACC AGGGAAGTTT TTAGTCTTCA TTCAAATCAG GATGCAGTTG
  GGCAGAAATC GGTGTCCAGC TGCCTGCCCA GCCCCTCTGG CTGCCCCCTG CTGGGTCCTT
  CAGCTTAGCC AGGTATTAGA GGCAGCTGAA TCCTCTGTTC CAGAAAGGGA TCCCTATAGA
  R
  CCGGACTAGG GACTTGGAGC GGAGCCTTGG TTTGGCACTG GTTGGGTGGT GGCTCCTTTG
  ATAGTGTGGG AAGCTTTGGG CTCAGGATAC TATCCCTCTG TATATCTCTG CTTTCTACTC
  CAGGCAGGGC TTCCATGAAG ATAAAAATGA AGGCCCCGGT GAGATACTGA AGGCAGACAG
  GCTGAGTGAC CCAGGGGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063745	NES12087965	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31551893					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063745	NES12087965	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78453727 () rs orientation: forward

Symbol	Name	Function Class
Rac2	Rac family small GTPase 2	within coordinates
Rr505328	regulatory region 505328	1586 bp distal
Rr505329	regulatory region 505329	767 bp proximal
Tssr135250	transcription start site region 135250	1247 bp downstream