rs31551954 SNP Detail

Summary

• ID
  rs31551954
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171124289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCTGTG TTGTTTGGTA
  GATTATTTGT TTTTCTTTTG AGACAAGGTC TGTGTACTCC TGGATGTCCT AGAATTCTCT
  GTGTAGACCA GGCTGCCCTT GAACTCACAG GATCCAAAGG CCCCTTGCAA TTGGAGTGCT
  GGGGTTAAAG ATGTTCTGTA CCCTGCTTGG CTAATAGAGT GTTCTTGTCC TCTCTCCCCT
  M
  TGTTGTTTGA TAGTATGTTC TTAGTTTCTT CCTTTCATTC TCAGTGTTGC TTTGGTTTTT
  GAGACAGGTC TCATGTATCT GAATTCCTGA CTCCCAGGTC TCCATGTCCC AAGTACTGGT
  ATTACAGGCA CACCACCAAG TCTAGAGGTT TTGAATCTTA CTAGCATGCC ACACAGCTCT
  TTATAAAGAT ATTAGATGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49750365	NES13031212	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31551954					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750365	NES13031212	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171124289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	1834 bp distal
Rr28967	regulatory region 28967	1089 bp distal
Rr31956	regulatory region 31956	within coordinates
Rr372447	regulatory region 372447	60 bp downstream
Tssr15031	transcription start site region 15031	1929 bp upstream
Tssr15032	transcription start site region 15032	1877 bp upstream
Tssr15033	transcription start site region 15033	1705 bp upstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	1714 bp upstream