rs31551958 SNP Detail

Summary

• ID
  rs31551958
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171122712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTCAAGAC CTTCCCAAAC CAGCAAAGTT GTTTGAATTT
  CAGGTTTTTC TAGACTGTCT TCAAAGTCCT ATCTCCTAAG ATGCGCAATT TAACGTCTTT
  S
  TTCTCCAGAG TGACTTCCTT ACTTTCCATC CCTGTCCTGA ATAATTAACA CAACTGAATT
  AGGAAGTATG TAAGCTTGTT TGTTTTTTAA AGGACATTGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss49750370	NES13031304	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31551958					SNP	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750370	NES13031304	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171122712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	257 bp distal
Rr28967	regulatory region 28967	within coordinates
Rr31956	regulatory region 31956	889 bp proximal
Rr372447	regulatory region 372447	within coordinates
Tssr15031	transcription start site region 15031	352 bp upstream
Tssr15032	transcription start site region 15032	300 bp upstream
Tssr15033	transcription start site region 15033	128 bp upstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	137 bp upstream