rs31551959 SNP Detail

Summary

• ID
  rs31551959
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171122554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTTTATTT ATTTATTGTA AGGAAATAAA ATTGACCTAC
  GGGTGTGAGC GTCCGGAAGA ACAGAATGGA GGCGGGCTAC TCTGTCCACC TATCATTAAA
  W
  CACCGGAGCC TGCTCAGAGA ACGACTTCCG TTCATGCTCA GAAGCAATCT TGGGAAAAAC
  TCAAGACCTT CCCAAACCAG CAAAGTTGTT TGAATTTCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49750371	NES13031302	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	A	T	A		T	A	T	A		T	T	A	T		T
ss119997244	PARCsnp_1.12699	PARC_SEQ	INBRED	f	SNP								T		A
ss119999065	PARCsnp_1.01801	PARC_SEQ	INBRED	f	SNP								T		A
ss146159430	ENSMUSSNP7082563	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							A
ss320117860	CHEV_1_173225112	CHEVERUD	SCREENING_POP	f	SNP													A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31551959					SNP	A	A	T	T	A	T	A	T	T	A	T	A	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750371	NES13031302	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171122554 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	99 bp distal
Rr28967	regulatory region 28967	within coordinates
Rr31956	regulatory region 31956	1047 bp proximal
Rr372447	regulatory region 372447	within coordinates
Tssr15031	transcription start site region 15031	194 bp upstream
Tssr15032	transcription start site region 15032	142 bp upstream
Tssr15033	transcription start site region 15033	within coordinates
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	within coordinates