rs31551962 SNP Detail

Summary

• ID
  rs31551962
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171121878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGATCTAC TGGGTTTTGA
  AGCAGATAGA AAGCACCAAA AGGAGGGCAA TCTTTCTCTT CCCATAACAG GAATTAGCTG
  AAAGGATGGC TAATTTATAA CTAAAAACAT CTCTCTCTCT ACCTCTAAAC ACTTTAGGTT
  TTCAGTCCTG ACATTAATTC CATCCATTTC ATCATGAAGA ATGAAAGAGC AGTGATGCAC
  W
  GACACTTCTT CAGGCGCTAA GAAGTACTTT GACCCCCTAC CACAGCCAGC AGAGCAAGCA
  CCTGGTGCGA GAGGGACACG TCACCTTCCC GGAATACTGC TGTTTTTTCC TTCAAAGTCT
  AGCCCTACTG TGCTCCTAGC CGGAATCTCT TCTGCATCCT CCCTCCGGCC ACCCGTAACG
  CCCCCAGCCC CCCAAACAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49750375	NES13031296	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31551962					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750375	NES13031296	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171121878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	180 bp proximal
Rr28967	regulatory region 28967	within coordinates
Rr31956	regulatory region 31956	1723 bp proximal
Rr372447	regulatory region 372447	within coordinates
Tssr15031	transcription start site region 15031	447 bp downstream
Tssr15032	transcription start site region 15032	519 bp downstream
Tssr15033	transcription start site region 15033	632 bp downstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	within coordinates