rs31551979 SNP Detail

Summary

• ID
  rs31551979
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:4025206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACC GCGGCCGCCA TGGCCAGCTC
  S
  GGCGCGCCCG CCCTGTCCAC GTGAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss39301077	mCV23812968	ABI	CRAMUS_MOUSE	f	SNP	C	G		G
ss49379130	NES12542494	PERLEGEN	MM_PANEL2	f	SNP			C		C	C	C	C	G
ss147038840	ENSMUSSNP3100048	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs31551979					SNP	C	G	C	G	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49379130	NES12542494	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4025206 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	within coordinates
Gm2093	predicted gene 2093	315 bp upstream
Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	mRNA-UTR
Rr369897	regulatory region 369897	within coordinates
Rr498628	regulatory region 498628	within coordinates
Rr498629	regulatory region 498629	10 bp proximal
Rr498630	regulatory region 498630	324 bp proximal
Tssr133595	transcription start site region 133595	479 bp upstream
Tssr133596	transcription start site region 133596	within coordinates