rs31552244 SNP Detail

Summary

• ID
  rs31552244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172199050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC CATCTCCTGG TGCCCTTCTG
  R
  GAAGTGCCAG CTATTTTATG AGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45045341	mCV24593578	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss120009866	PARCsnp_1.19011	PARC_SEQ	INBRED	f	SNP		A	G
ss120013157	PARCsnp_1.08846	PARC_SEQ	INBRED	f	SNP		A	G
ss146189539	ENSMUSSNP5817944	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320124594	CHEV_1_174301614	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31552244					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172199050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1046	CpG island 1046	1514 bp distal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Tssr10190	transcription start site region 10190	998 bp downstream
Tssr10191	transcription start site region 10191	782 bp downstream
Tssr10192	transcription start site region 10192	602 bp downstream