rs31552354 SNP Detail

Summary

• ID
  rs31552354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171017731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGCTTCA GGGTTGATGA
  AGAAAGCTCA GCCCTGTGGT ATGAGGTAGC TCGCTCGCCC GCCCGCCCTT GGTAACAACT
  CAGCCCTGTA ACAGCAGAGT AGTCAGGAGG CCGAGCCATG AACATCTCAG AGGTTAATCT
  GAGCCAGTGA GTTCTACGTC AGCCTAGGCT AGCGATGCAG GAAGAAAGGA AGGAGACAAA
  Y
  CAGGCTTCCG TGAGTCTGAA TGGTGAGAAG AATGTCCCAG GTCTAAAGTC ATTGTTTGCC
  TTTGTTGTAG GTTTTTGTTT TTAAAGATTT ATCTTTTTAA TTTATTTTTA AAGATTTATC
  TGTGTATTTA ATGTATGTGA GTACACTGTT TCTGTCTTCA GACCCACCAG AAGAGGGCAT
  CAGATCCCAT TACAGATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49750810	NES13033727	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C		T	C	C	T	C	C	C	C
ss119995964	PARCsnp_1.12059	PARC_SEQ	INBRED	f	SNP								T		C
ss119997558	PARCsnp_1.01048	PARC_SEQ	INBRED	f	SNP								T		C
ss146156075	ENSMUSSNP4019286	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31552354					SNP	C	C	C	T	C	T	C	T	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750810	NES13033727	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171017731 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	within coordinates
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423235	regulatory region 423235	1526 bp distal
Rr423236	regulatory region 423236	491 bp distal
Rr423237	regulatory region 423237	77 bp distal
Rr423238	regulatory region 423238	163 bp proximal