rs31552518 SNP Detail

Summary

• ID
  rs31552518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84587842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CACAGTCAGA CCTGCCTGCC TGCCTCCCTC TGCTCTGGGT GGCCACAAAA
  Y
  AGGAAGGCAT GAAATAAATT TACAGCCCCA GACTCCTGTC TGCCCCCTGG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39301635	mCV24773964	ABI	CRAMUS_MOUSE	f	SNP		C					T
ss48087339	NES12084233	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C		C	T	T	C		C	C	C	C		T
ss325039427	CHEV_15_84534071	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31552518					SNP	T	C	T	C	T	C	T	C	T	T	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48087339	NES12084233	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84587842 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr304870	regulatory region 304870	1242 bp distal
Rr304871	regulatory region 304871	within coordinates
Rr314877	regulatory region 314877	1043 bp distal
Rr314878	regulatory region 314878	1723 bp proximal
Rr404546	regulatory region 404546	1300 bp downstream