rs31552920 SNP Detail

Summary

• ID
  rs31552920
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78376808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGTATAT GAGTCATAGA
  CAGTCTATCA GGACAAGGAC ATTTGGATTC CATTCATTCC TGGGTCTCTG ATCTCCAAAT
  GAATACCTAT CACAGGGCTA CCAAGAGCAC CCACTTCAGC CCTGAGGAGC ATGGAAGGCA
  AGACCGTGGC CTGCCTTAGG TGGTTCTTGC AGTCCACATA AGCTGGTGGC TTTGGTCTGG
  W
  CCTCTAAAAG CCTCCCTGGA CTTGTCCTTC CCACATTGCA CCCAAGGCTC CTGGTATCCC
  ATTTCTCATT CTCTTTTCTG CTGGTTCTGT GGCACTCGCC CTGGTCTCCC CCATGAAGGA
  AGGACAATCT ACCTTGGGTT GCCTTCCATC CCTCTGGCTT GTCACCTACC ACACTGCCAA
  GGCAGTGTGC CCACTCCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063001	NES12076800	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31552920					SNP	A	A	A	A	A	A	T	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063001	NES12076800	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78376808 () rs orientation: forward

Symbol	Name	Function Class
Il2rb	interleukin 2 receptor, beta chain	within coordinates
Rr505292	regulatory region 505292	845 bp proximal
Rr505293	regulatory region 505293	1138 bp proximal
Tssr131958	transcription start site region 131958	1243 bp upstream
Tssr131959	transcription start site region 131959	1261 bp upstream
Tssr135223	transcription start site region 135223	999 bp downstream
Tssr135224	transcription start site region 135224	1118 bp downstream
Tssr135225	transcription start site region 135225	1750 bp downstream
Tssr135226	transcription start site region 135226	1764 bp downstream