rs31552921 SNP Detail

Summary

• ID
  rs31552921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78377176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGATGGGTG GCGGCCCGGT GACAGTGTTT GCCGGGTATG
  TTCATCAAAC ACTGCCCAGG CCTTGTGCCC AGGCCCTCAT ACTTCCAGCT ACTCTATGCT
  R
  CCTGGCAGCT CAGCAGCTAT TTGGTGTCTT TGCTAGGCAG ACAAGGAGAC CAAGGATCCC
  AGGACCAAGT CTACGGAACT GGGGTTCCAC CCCAGACCTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063003	NES12076803	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31552921					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063003	NES12076803	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78377176 () rs orientation: forward

Symbol	Name	Function Class
Il2rb	interleukin 2 receptor, beta chain	within coordinates
Rr505292	regulatory region 505292	477 bp proximal
Rr505293	regulatory region 505293	770 bp proximal
Rr505294	regulatory region 505294	1810 bp proximal
Rr505295	regulatory region 505295	1879 bp proximal
Tssr131958	transcription start site region 131958	875 bp upstream
Tssr131959	transcription start site region 131959	893 bp upstream
Tssr135223	transcription start site region 135223	631 bp downstream
Tssr135224	transcription start site region 135224	750 bp downstream
Tssr135225	transcription start site region 135225	1382 bp downstream
Tssr135226	transcription start site region 135226	1396 bp downstream