rs31552923 SNP Detail

Summary

• ID
  rs31552923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78377300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTGCCG GGTATGTTCA
  TCAAACACTG CCCAGGCCTT GTGCCCAGGC CCTCATACTT CCAGCTACTC TATGCTGCCT
  GGCAGCTCAG CAGCTATTTG GTGTCTTTGC TAGGCAGACA AGGAGACCAA GGATCCCAGG
  ACCAAGTCTA CGGAACTGGG GTTCCACCCC AGACCTCCCT TCCCTGGAAG ATCAACTCCC
  Y
  GCAGGTGCTT GGGTAGAAAG GGAGCCCTAA CAGGTTCAGC CCAAGCAAGG GGCCTTCCAC
  AGCCCCTTGT GAGCCCAACA GGATCTGAAG CACTCTACGT GTTCATTCAA TAAGGCAGCA
  AGCCAGGTCG GACCCAGACA TCTGAGCAGC CTCATGATGG CGTGGGGTTG GGGTGAGGGA
  GGGCATAACC CTGGGGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063005	NES12076805	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31552923					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063005	NES12076805	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78377300 () rs orientation: forward

Symbol	Name	Function Class
Il2rb	interleukin 2 receptor, beta chain	within coordinates
Rr505292	regulatory region 505292	353 bp proximal
Rr505293	regulatory region 505293	646 bp proximal
Rr505294	regulatory region 505294	1686 bp proximal
Rr505295	regulatory region 505295	1755 bp proximal
Tssr131958	transcription start site region 131958	751 bp upstream
Tssr131959	transcription start site region 131959	769 bp upstream
Tssr135223	transcription start site region 135223	507 bp downstream
Tssr135224	transcription start site region 135224	626 bp downstream
Tssr135225	transcription start site region 135225	1258 bp downstream
Tssr135226	transcription start site region 135226	1272 bp downstream
Tssr135227	transcription start site region 135227	1937 bp downstream
Tssr135228	transcription start site region 135228	1959 bp downstream