rs31552967 SNP Detail

Summary

• ID
  rs31552967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78453815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGTGTCCA GCTGCCTGCC
  CAGCCCCTCT GGCTGCCCCC TGCTGGGTCC TTCAGCTTAG CCAGGTATTA GAGGCAGCTG
  AATCCTCTGT TCCAGAAAGG GATCCCTATA GAGCCGGACT AGGGACTTGG AGCGGAGCCT
  TGGTTTGGCA CTGGTTGGGT GGTGGCTCCT TTGATAGTGT GGGAAGCTTT GGGCTCAGGA
  Y
  ACTATCCCTC TGTATATCTC TGCTTTCTAC TCCAGGCAGG GCTTCCATGA AGATAAAAAT
  GAAGGCCCCG GTGAGATACT GAAGGCAGAC AGGCTGAGTG ACCCAGGGGG ACAAGCCTCA
  TAGCTGCTAT TGGCTATTGG CCATCAGGAT ATTGTAACAC CCATTTCCCT TGAGGACCCA
  ATGCAATCAC TAGTGTGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063751	NES12087969	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31552967					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063751	NES12087969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78453815 () rs orientation: forward

Symbol	Name	Function Class
Rac2	Rac family small GTPase 2	within coordinates
Rr505328	regulatory region 505328	1674 bp distal
Rr505329	regulatory region 505329	679 bp proximal
Tssr135250	transcription start site region 135250	1159 bp downstream