rs31552970 SNP Detail

Summary

• ID
  rs31552970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78454084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGAGATA CTGAAGGCAG
  ACAGGCTGAG TGACCCAGGG GGACAAGCCT CATAGCTGCT ATTGGCTATT GGCCATCAGG
  ATATTGTAAC ACCCATTTCC CTTGAGGACC CAATGCAATC ACTAGTGTGG TATCCTGTAC
  AGGGCCACCA ACCCAAAGGC ATTCTAACTA GATGCTAGTG GTGAAGACTT CTCTGGATCT
  Y
  GTCACCTCGA GGCACAGATA TCACTTATGA GACATATGTA TATTACACAA TGTATCAACC
  ACTTTCTTGA GAAGCCAAGG CCTTCTCAAC ATATGGGTCC TTGGTCTTGA GAGAGAGCTG
  GCAAGCTCCT CTGGCGATTG ACAGGCCTTT AGCCTTGAAG GCTTCCAGGA GGGCACCATG
  GATAGGCCTG GAGGGTGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063755	NES12087971	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31552970					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063755	NES12087971	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78454084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	1839 bp proximal
Rac2	Rac family small GTPase 2	within coordinates
Rr369961	regulatory region 369961	1736 bp upstream
Rr505328	regulatory region 505328	1943 bp distal
Rr505329	regulatory region 505329	410 bp proximal
Tssr131969	transcription start site region 131969	1914 bp upstream
Tssr135250	transcription start site region 135250	890 bp downstream