rs31552973 SNP Detail

Summary

• ID
  rs31552973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78454301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT GTAGGTATGA GAATGAGACA
  R
  GAAATCACCC TAGGGCATTT CTGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39397502	mCV24707016	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss48063759	NES12087973	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A		G	A	A	A		G	G	G	G		G
ss148184888	ENSMUSSNP3241428	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss325024868	CHEV_15_78400531	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31552973					SNP	A	A	A	A	G	A	G	G	A	A	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063759	NES12087973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78454301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	1622 bp proximal
Rac2	Rac family small GTPase 2	within coordinates
Rr369961	regulatory region 369961	1519 bp upstream
Rr505329	regulatory region 505329	193 bp proximal
Tssr131969	transcription start site region 131969	1697 bp upstream
Tssr135250	transcription start site region 135250	673 bp downstream