rs31553105 SNP Detail

Summary

• ID
  rs31553105
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180469574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACACAGGC TTGGCCCCTT CCCCTGGGAC TACAGGTGGC
  CCTGGACCTT TCCGGAGATG ATCCAGCCGG GATACAGTGC CGAGGTAGCC CCATTCCCAG
  W
  CTCCCTCCTG AGTGGATGTG TCTCTAGACT GTGGGGTGGG CATTACACAC GGATGTGAGC
  ACCGCAGCCC ATATAAGTAT GTTATTCTGC CTGACACCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45044949	mCV22719615	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31553105					SNP	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180469574 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1114	CpG island 1114			within coordinates
Lin9	lin-9 DREAM MuvB core complex component			Intron
				Noncoding-Transcript-Variant
Rr424540	regulatory region 424540			1619 bp distal
Rr424541	regulatory region 424541			665 bp distal
Rr424542	regulatory region 424542			within coordinates
Tssr10481	transcription start site region 10481			1303 bp downstream
Tssr10482	transcription start site region 10482			635 bp downstream