rs31554047 SNP Detail

Summary

• ID
  rs31554047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78377533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCAGCCC AAGCAAGGGG
  CCTTCCACAG CCCCTTGTGA GCCCAACAGG ATCTGAAGCA CTCTACGTGT TCATTCAATA
  AGGCAGCAAG CCAGGTCGGA CCCAGACATC TGAGCAGCCT CATGATGGCG TGGGGTTGGG
  GTGAGGGAGG GCATAACCCT GGGGGAGAGG AAGAGGAATG AAAGAGGCAA GATTATAGCC
  R
  GGCCACAAGC CACAGCCAAA AACAGAGAAT GCCTAAGAAA AGGCACTCAA ACCTGCTCCC
  CACCCCTGGC TGAAGAGGCA CAAAAGCATC CACCCATCAT GGACAGGGTT AGACGGAAGA
  GCATATGGAA GGTTCTGGAA GGGTCAGGCT GGGGGGCAGG GTAGCTTCAA GCAGTCATGG
  TGGTTGCAGC TTCCTTCGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063009	NES12076807	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G	G	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31554047					SNP	G	G	G	G	A	G	A	G	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063009	NES12076807	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78377533 () rs orientation: forward

Symbol	Name	Function Class
Il2rb	interleukin 2 receptor, beta chain	within coordinates
Rr505292	regulatory region 505292	120 bp proximal
Rr505293	regulatory region 505293	413 bp proximal
Rr505294	regulatory region 505294	1453 bp proximal
Rr505295	regulatory region 505295	1522 bp proximal
Rr505296	regulatory region 505296	1928 bp proximal
Tssr131958	transcription start site region 131958	518 bp upstream
Tssr131959	transcription start site region 131959	536 bp upstream
Tssr135223	transcription start site region 135223	274 bp downstream
Tssr135224	transcription start site region 135224	393 bp downstream
Tssr135225	transcription start site region 135225	1025 bp downstream
Tssr135226	transcription start site region 135226	1039 bp downstream
Tssr135227	transcription start site region 135227	1704 bp downstream
Tssr135228	transcription start site region 135228	1726 bp downstream
Tssr135229	transcription start site region 135229	1879 bp downstream
Tssr135230	transcription start site region 135230	1908 bp downstream