rs31554049 SNP Detail

Summary

• ID
  rs31554049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78377744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCCAAA AACAGAGAAT
  GCCTAAGAAA AGGCACTCAA ACCTGCTCCC CACCCCTGGC TGAAGAGGCA CAAAAGCATC
  CACCCATCAT GGACAGGGTT AGACGGAAGA GCATATGGAA GGTTCTGGAA GGGTCAGGCT
  GGGGGGCAGG GTAGCTTCAA GCAGTCATGG TGGTTGCAGC TTCCTTCGGC AAGAGGGAAA
  Y
  TGAATCTCTG GGAGACTAAG AAAACCACTC CAAAACCACA CAGCACAAGG CCAGCCTCGG
  GCAGAGTGAG TACAGCCCAA GAATCTCAGA GTCCCAGGCA CTGTCCCCCT GAGGCTCACC
  CACGTATGCC CTTCGCAACC ACCAGACGTT CATCTCCCTG ACTCATATAT GTCTCCGCTG
  AGGCCCTGAA AAGGTCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063011	NES12076808	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31554049					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063011	NES12076808	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78377744 () rs orientation: forward

Symbol	Name	Function Class
Il2rb	interleukin 2 receptor, beta chain	within coordinates
Rr505292	regulatory region 505292	within coordinates
Rr505293	regulatory region 505293	202 bp proximal
Rr505294	regulatory region 505294	1242 bp proximal
Rr505295	regulatory region 505295	1311 bp proximal
Rr505296	regulatory region 505296	1717 bp proximal
Tssr131958	transcription start site region 131958	307 bp upstream
Tssr131959	transcription start site region 131959	325 bp upstream
Tssr135223	transcription start site region 135223	63 bp downstream
Tssr135224	transcription start site region 135224	182 bp downstream
Tssr135225	transcription start site region 135225	814 bp downstream
Tssr135226	transcription start site region 135226	828 bp downstream
Tssr135227	transcription start site region 135227	1493 bp downstream
Tssr135228	transcription start site region 135228	1515 bp downstream
Tssr135229	transcription start site region 135229	1668 bp downstream
Tssr135230	transcription start site region 135230	1697 bp downstream