rs31554053 SNP Detail

Summary

• ID
  rs31554053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78377994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCCTCG GGCAGAGTGA
  GTACAGCCCA AGAATCTCAG AGTCCCAGGC ACTGTCCCCC TGAGGCTCAC CCACGTATGC
  CCTTCGCAAC CACCAGACGT TCATCTCCCT GACTCATATA TGTCTCCGCT GAGGCCCTGA
  AAAGGTCTGT CATCCCACAG ACCCAGGCTG CTCTAACTGG GTCACCTGAT TTCCAGTACA
  R
  TGGTGATGCT GACGGAGGAG GAGGGTCAGC CATGAGTGAC AGTCGTGTCA CACTCCCTGC
  GTCAGACTGA CCCACACATG TCACAGAGAG GTCTCACAGC ACAAGAGCAG GTTCTGTGAC
  TGACTGCTCC TTCCCTATGG GAAGATCAGG GCCTAAAGCA GCCTGTTTCC CAGGATAAAG
  GTTCCAGTGC TGGGGCAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063015	NES12076810	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G	G	G	G	G	G	A	A	G	A
ss148183827	ENSMUSSNP6611359	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31554053					SNP	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063015	NES12076810	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78377994 () rs orientation: forward

Symbol	Name	Function Class
Il2rb	interleukin 2 receptor, beta chain	within coordinates
Rr505292	regulatory region 505292	49 bp distal
Rr505293	regulatory region 505293	within coordinates
Rr505294	regulatory region 505294	992 bp proximal
Rr505295	regulatory region 505295	1061 bp proximal
Rr505296	regulatory region 505296	1467 bp proximal
Tssr131958	transcription start site region 131958	57 bp upstream
Tssr131959	transcription start site region 131959	75 bp upstream
Tssr135223	transcription start site region 135223	177 bp upstream
Tssr135224	transcription start site region 135224	47 bp upstream
Tssr135225	transcription start site region 135225	564 bp downstream
Tssr135226	transcription start site region 135226	578 bp downstream
Tssr135227	transcription start site region 135227	1243 bp downstream
Tssr135228	transcription start site region 135228	1265 bp downstream
Tssr135229	transcription start site region 135229	1418 bp downstream
Tssr135230	transcription start site region 135230	1447 bp downstream