rs31554131 SNP Detail

Summary

• ID
  rs31554131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78454599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTAACAT CTCTAGAAGG
  GAAGATTGGG GGATACTTGA AGAGCTTGAA ATCTATGCAG GAAGCTGGGG AGCTGCTCTG
  TGAGTATGGG GATGCTCTGA GACTCTTCTG ACACCTGCGG ACTCCTTGTG TATCATGTGG
  GAGCGGATGG CTACATCCTG CACCAGAAGA TAGGCTTCCC ACAGACCACA GCTAGCACTG
  Y
  GCCCACCCCA GCACACGGGT CCCCAGACAC TGCTGCTAAG TTTCTGAGGT ACTCTTCCTC
  CCTCACCTCC ATAGCCCATC TCCACCCCTC TTTCTCCTCC TGGCTGGCTT GAAGGACATA
  TTCCTTCCTG TCCTTTTACG CCTTCCCACC CCACAGTCCC TCTGCCTTCT GGAGCCTCTG
  CCTCCTTAGC ATACATTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063767	NES12087977	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31554131					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063767	NES12087977	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78454599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	1324 bp proximal
Rac2	Rac family small GTPase 2	Intron
Rr369961	regulatory region 369961	1221 bp upstream
Rr505329	regulatory region 505329	within coordinates
Rr505330	regulatory region 505330	1756 bp proximal
Tssr131969	transcription start site region 131969	1399 bp upstream
Tssr135250	transcription start site region 135250	375 bp downstream