rs31554220 SNP Detail

Summary

• ID
  rs31554220
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19133355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATTGTGG ACACTGACCA
  GCAAACAGAC ATGGGTCAAT GCTGGAAAAA AAGCAAAACT GGAGGTGATG TTGTTAGATC
  GAGCTACTAC AAAGTTCAGG AGAAGGGAAA GCTCCCTAAG CAGCCTGTCA TTGTGAAGAC
  CAAATTCTTC AATAGAAGAG CTGAAAAGAA GATTAAGGTT GTTGGAGGTG TCTGTAGCCT
  S
  GTGGCTTGAA GCCTCTCACC CAGAAAGTTA ATCAAATGCT AACATTTTCA AAAAACATAA
  AAATAATAAT AAAAGGGTGT TTGGAACCTG AAATTAGGAT AAGAAATAAT GATGTTCAGC
  AAAGCCAGGT CAGGACACAA AGTTTGAATT ATCAGTATTG GTCTTTTTAA TTTTTGTTTA
  TTTCCATTGT TTAGACATTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45044966	mCV24125225	ABI	CRAMUS_MOUSE	f	SNP	G	C						C
ss50917846	NES13482424	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	G	C	C	C	C	C	C	C	C	C
ss148699948	ENSMUSSNP4720199	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31554220					SNP	G	C	C	C	G	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50917846	NES13482424	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19133355 () rs orientation: forward

Symbol	Name	Function Class
Gm15825	predicted gene 15825	169 bp downstream
Gm28344	predicted gene 28344	within coordinates