rs3155467 SNP Detail

Summary

• ID
  rs3155467
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54359391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGC ACACACAGAA GACTTTCAGA
  K
  AGCTAACACA GTCCCCGGTG GGAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss62394274	NES17237540	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T		G	T	T		G
ss139556347	ENSMUSSNP3458814	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss324634960	CHEV_14_54741609	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3155467					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62394274	NES17237540	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54359391 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Rr292699	regulatory region 292699	10 bp proximal
Rr301183	regulatory region 301183	1334 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd2	T cell receptor delta diversity 2	292 bp upstream
Trdj1	T cell receptor delta joining 1	1204 bp upstream
Tssr125528	transcription start site region 125528	1541 bp downstream
Tssr125529	transcription start site region 125529	443 bp downstream
Tssr125530	transcription start site region 125530	30 bp downstream
Tssr125531	transcription start site region 125531	11 bp downstream
Tssr125532	transcription start site region 125532	within coordinates
Tssr125533	transcription start site region 125533	103 bp upstream
Tssr125534	transcription start site region 125534	179 bp upstream
Tssr125535	transcription start site region 125535	208 bp upstream
Tssr125536	transcription start site region 125536	227 bp upstream
Tssr125537	transcription start site region 125537	256 bp upstream
Tssr125538	transcription start site region 125538	296 bp upstream
Tssr125539	transcription start site region 125539	1189 bp upstream
Tssr128533	transcription start site region 128533	1650 bp downstream