rs3155487 SNP Detail

Summary

• ID
  rs3155487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54373841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAACCAC AATTATTTGT
  TACTCAACCT TCAGGTCCTT GGCTCTCTTC TGGGCTCAGT AAGTAAAAAG CAAACTCATG
  ACCACCATGA AAGTCACTCT GAGTAATGGG GGAAAAATAG GACTCAAATC AAAATATACT
  GTTCATGGTT CAAGAGAAGG GAGCCAAAGT ATGAGAAGAC GATGTTTCTA AGGTCTCCTC
  R
  CCTTGCCTTT CAGTCAGTAA GAAATTTAAT ATTCTATCTC TGTATCCAGC TACTGTGTTT
  TTCTTGACAG CCTTCTCAAA TAAATTGGGA GTTAAATCTT GCATCTTGAA GTCAGCTCTC
  TGTCACCCTC TCTTGCTTTG CTTCAGCCCT GTTCCCTCAT CTCTTAGATG GAGACTCTGT
  GCTCACTTTC CTATCCAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62394091	NES17237380	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	G	A		G
ss324635020	CHEV_14_54756059	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3155487					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62394091	NES17237380	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54373841 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm43434	predicted gene 43434	within coordinates
Rr299391	regulatory region 299391	1760 bp proximal
Rr492141	regulatory region 492141	1992 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdj2	T cell receptor delta joining 2	395 bp upstream
Tssr125540	transcription start site region 125540	356 bp upstream
Tssr128535	transcription start site region 128535	1877 bp downstream