rs31554925 SNP Detail

Summary

• ID
  rs31554925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78378091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTCATCTC CCTGACTCAT
  ATATGTCTCC GCTGAGGCCC TGAAAAGGTC TGTCATCCCA CAGACCCAGG CTGCTCTAAC
  TGGGTCACCT GATTTCCAGT ACAGTGGTGA TGCTGACGGA GGAGGAGGGT CAGCCATGAG
  TGACAGTCGT GTCACACTCC CTGCGTCAGA CTGACCCACA CATGTCACAG AGAGGTCTCA
  Y
  AGCACAAGAG CAGGTTCTGT GACTGACTGC TCCTTCCCTA TGGGAAGATC AGGGCCTAAA
  GCAGCCTGTT TCCCAGGATA AAGGTTCCAG TGCTGGGGCA GTCCAAGGCC TCACAGGTCT
  GTGAGGTACA GGGTCGACTG AGGGAGGACG GACGGCAAGC AAGAGCTTGT CTGTCAGATC
  TGGTGGCCTT TGACCTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063017	NES12076811	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31554925					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063017	NES12076811	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78378091 () rs orientation: forward

Symbol	Name	Function Class
Il2rb	interleukin 2 receptor, beta chain	within coordinates
Rr505292	regulatory region 505292	146 bp distal
Rr505293	regulatory region 505293	within coordinates
Rr505294	regulatory region 505294	895 bp proximal
Rr505295	regulatory region 505295	964 bp proximal
Rr505296	regulatory region 505296	1370 bp proximal
Tssr131958	transcription start site region 131958	31 bp downstream
Tssr131959	transcription start site region 131959	9 bp downstream
Tssr135223	transcription start site region 135223	274 bp upstream
Tssr135224	transcription start site region 135224	144 bp upstream
Tssr135225	transcription start site region 135225	467 bp downstream
Tssr135226	transcription start site region 135226	481 bp downstream
Tssr135227	transcription start site region 135227	1146 bp downstream
Tssr135228	transcription start site region 135228	1168 bp downstream
Tssr135229	transcription start site region 135229	1321 bp downstream
Tssr135230	transcription start site region 135230	1350 bp downstream