rs31554927 SNP Detail

Summary

• ID
  rs31554927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78378245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCCTGC GTCAGACTGA
  CCCACACATG TCACAGAGAG GTCTCACAGC ACAAGAGCAG GTTCTGTGAC TGACTGCTCC
  TTCCCTATGG GAAGATCAGG GCCTAAAGCA GCCTGTTTCC CAGGATAAAG GTTCCAGTGC
  TGGGGCAGTC CAAGGCCTCA CAGGTCTGTG AGGTACAGGG TCGACTGAGG GAGGACGGAC
  R
  GCAAGCAAGA GCTTGTCTGT CAGATCTGGT GGCCTTTGAC CTCAGAGATC CTTTCTCTGG
  CCACCTCTCC AGAGACACAC ACATTCACAA AGACACACAC ACACACACAC ACACACACAC
  ACACACCACT GTTCACCTCT TGCTGTTCAG TTCAGCTGAG GAGTGTGTGA AAGAAAGGGG
  ACCTTCAAAG GTAGTTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063019	NES12076812	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31554927					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063019	NES12076812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78378245 () rs orientation: forward

Symbol	Name	Function Class
Il2rb	interleukin 2 receptor, beta chain	within coordinates
Rr505292	regulatory region 505292	300 bp distal
Rr505293	regulatory region 505293	53 bp distal
Rr505294	regulatory region 505294	741 bp proximal
Rr505295	regulatory region 505295	810 bp proximal
Rr505296	regulatory region 505296	1216 bp proximal
Tssr131958	transcription start site region 131958	185 bp downstream
Tssr131959	transcription start site region 131959	163 bp downstream
Tssr135223	transcription start site region 135223	428 bp upstream
Tssr135224	transcription start site region 135224	298 bp upstream
Tssr135225	transcription start site region 135225	313 bp downstream
Tssr135226	transcription start site region 135226	327 bp downstream
Tssr135227	transcription start site region 135227	992 bp downstream
Tssr135228	transcription start site region 135228	1014 bp downstream
Tssr135229	transcription start site region 135229	1167 bp downstream
Tssr135230	transcription start site region 135230	1196 bp downstream