rs31554939 SNP Detail

Summary

• ID
  rs31554939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78455197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGCTCTG AAAGACAAGA
  GACAAGATGC AGGAGAGACC AAGGTCATAG CTCCCCTTCA CCAAGGTCAA GATGAAGGGG
  AGGCGGGAAC TGTACTCAGG CTCCAGTCTC CCAATCCCAG ACACCCCATA CCAGTGTGCT
  CTACCCCGTG CAGTGCCCAT AAAGAACCTG ACTTCAGTCT TAGCCATGGG TGTGAGCCAC
  R
  CATCTGAGGA GAACTCCAGT ACTGTACATG TACCAGTGTG TGGGATACAG GTGATAGGCA
  CAGATGACCA TGGGGCCGAA CAGAGGACCC TGGAGAGCTG GGTAAGACTG TCACGTGTCT
  CTCTTAAGCT TCAGATCCTG CCTCCATCAT TTGCCATCTA CACAACTTTG CAAGTCACCT
  AAGCACCTTG TACCTCAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063775	NES12087982	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31554939					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063775	NES12087982	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78455197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	726 bp proximal
Rac2	Rac family small GTPase 2	within coordinates
Rr369961	regulatory region 369961	623 bp upstream
Rr404481	regulatory region 404481	1657 bp upstream
Rr505329	regulatory region 505329	within coordinates
Rr505330	regulatory region 505330	1158 bp proximal
Rr505331	regulatory region 505331	1776 bp proximal
Tssr131969	transcription start site region 131969	801 bp upstream
Tssr135250	transcription start site region 135250	191 bp upstream
Tssr135251	transcription start site region 135251	1671 bp downstream
Tssr135252	transcription start site region 135252	1689 bp downstream
Tssr135253	transcription start site region 135253	1712 bp downstream
Tssr135254	transcription start site region 135254	1757 bp downstream