rs31555125 SNP Detail

Summary

• ID
  rs31555125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172525810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCT TTTCCCTATG GGAGAATGGT
  Y
  GGAACTTAAT ATTTTGCATA AGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45142991	mCV24592109	ABI	CRAMUS_MOUSE	f	SNP		T	T			C		T
ss49751111	NES13026309	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		T	T	T		C	T
ss146199173	ENSMUSSNP3004848	ENSEMBL	ENSEMBL_Sanger	f	SNP			T					T
ss320126981	CHEV_1_174628374	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs31555125					SNP	T	T	T	T	T	C	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751111	NES13026309	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172525810 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Crp	C-reactive protein, pentraxin-related			Intron
				Noncoding-Transcript-Variant
D1Mit149	DNA segment, Chr 1, Massachusetts Institute of Technology 149			986 bp proximal
D1Mit149.1	DNA segment, Chr 1, Massachusetts Institute of Technology 149.1			834 bp proximal
Rr423653	regulatory region 423653			471 bp distal
Rr423654	regulatory region 423654			178 bp distal
Tssr10246	transcription start site region 10246			180 bp downstream
Tssr10247	transcription start site region 10247			746 bp upstream
Tssr10248	transcription start site region 10248			812 bp upstream
Tssr10249	transcription start site region 10249			836 bp upstream
Tssr10250	transcription start site region 10250			891 bp upstream
Tssr10251	transcription start site region 10251			947 bp upstream
Tssr10252	transcription start site region 10252			1013 bp upstream
Tssr10253	transcription start site region 10253			1062 bp upstream
Tssr10254	transcription start site region 10254			1127 bp upstream