rs3155518 SNP Detail

Summary

• ID
  rs3155518
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54387470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT CTGGAGCCCC TGAGCCATCC
  C
  CTCTCATTCA CATGCACCAA AAATT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss139556829	ENSMUSSNP6068748	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324635120	CHEV_14_54769688	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs3155518					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54387470 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	1145 bp downstream
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdv5	T cell receptor delta variable 5	812 bp upstream
Tssr128536	transcription start site region 128536	773 bp upstream
Tssr128537	transcription start site region 128537	754 bp upstream
Tssr128538	transcription start site region 128538	733 bp upstream
Tssr128539	transcription start site region 128539	670 bp upstream
Tssr128540	transcription start site region 128540	1386 bp downstream