rs31555197 SNP Detail

Summary

• ID
  rs31555197
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79212533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGACATTC AAGACAGGGG
  CACCAGGAGG TTTGGGAAAG GGCCGTCAGG CCCCGCCCCC GCCGCGCCGT CACTCACCTC
  GGCTTACTCA GCACTTCTCA GCCCTCCTAC TTCCGCAAAC TGACGCGCCC CGCCCACGTG
  ACGACACTAC GGCTCTCCAC CAATCCACCG AGCCCATGCC GCAGGCAGGC TGTGGCCCCG
  M
  CCCCAAGCGT GGACCTCGCA CGCGGTCAGG CGCCGCCATC TTCTATAACT GCCCAATGGA
  AGCCGCTTCT GTTGCCAGGG GGCGGTCGGG CTTCTGACTG AAGCCAATTC TGCGTGGCTG
  ATGGGGGCCA TGCCTCGGGC GGGCGGAAGT TTCTCGTGAG GGCAGTTTGG CTGACGTGTT
  GATAAAGGGC AGGAGGCTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39301107	mCV22922453	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss148197514	ENSMUSSNP5645507	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31555197					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79212533 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	within coordinates
Cpgi7329	CpG island 7329	within coordinates
Pla2g6	phospholipase A2, group VI	within coordinates
Rr404497	regulatory region 404497	within coordinates
Rr505593	regulatory region 505593	380 bp distal
Rr505594	regulatory region 505594	592 bp distal
Rr505595	regulatory region 505595	within coordinates
Rr505596	regulatory region 505596	1110 bp proximal
Rr505597	regulatory region 505597	1251 bp proximal
Rr505598	regulatory region 505598	1609 bp proximal
Rr505599	regulatory region 505599	1740 bp proximal
Tssr132082	transcription start site region 132082	739 bp downstream
Tssr135328	transcription start site region 135328	183 bp upstream
Tssr135329	transcription start site region 135329	142 bp upstream
Tssr135330	transcription start site region 135330	72 bp upstream