rs3155523 SNP Detail

Summary

• ID
  rs3155523
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54389865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA TCAGCAACCT AAAAACCAGG
  A
  CTGACTTTCC TTAGCTTTAA ACCAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139556910	ENSMUSSNP1650842	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324635145	CHEV_14_54772083	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs3155523					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54389865 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Gm62807	predicted gene, 62807	745 bp upstream
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Tssr125542	transcription start site region 125542	738 bp upstream
Tssr125543	transcription start site region 125543	782 bp upstream
Tssr125544	transcription start site region 125544	798 bp upstream
Tssr125545	transcription start site region 125545	845 bp upstream
Tssr128540	transcription start site region 128540	998 bp upstream