rs31555300 SNP Detail

Summary

• ID
  rs31555300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161403610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTATTTTAT AAGGTTTTAT AAGAATGAAA
  CGCAGAGGAA AGCTTCAGGG CAAGGAAGAA AAGAGTGGAG ACAGTGAGAA TCGCAGTTCA
  TAAGGCAGAG TTCACACAGG CACTGACTAG TGCGGCATCC ATCAAAGGGG CTTTCCTCAA
  R
  GTGATTTGGA AGGGAACCTT CCAGCACTGC AGCAGTAAAG CCAAAGCAAG CAGCGTGAGC
  TCTGTGCATG CTGCCAAGGA AGCAGAAAGG ATGGCGAGAA CTGGATTGGC TGAGCAGGGC
  TTCATGTGTA AATACACTAT AGAATGTTAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45044977	mCV23101818	ABI	CRAMUS_MOUSE	f	SNP	G	G					A
ss60336174	NES15834522	PERLEGEN	MM_PANEL2	f	SNP		G	A	G	G	G		A	G		G	A	G	G		G
ss145916182	ENSMUSSNP3215083	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320080981	CHEV_1_163506172	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31555300					SNP	G	G	A	G	G	G	A	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336174	NES15834522	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161403610 () rs orientation: forward

Symbol	Name	Function Class
Gm31815	predicted gene, 31815	within coordinates
Rr421814	regulatory region 421814	within coordinates