rs31555538 SNP Detail

Summary

• ID
  rs31555538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78637550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCCAAGG ATTTTGTAGA
  TAAATGGGTG ATTGCAACCT ATGTTACATG CAATAAAGGT GAAGTATTGG ATGATTGAAG
  ATTCTAACAA GCATTATGAT TTACATGGAA ATCCAGGGAG CTGCTTTTTA AGAACGGATT
  ATGTGAGATT TTTTTCCTAG ATGTCCAATT TGTGCTCTGA GGCTGAAATT AAATGTACAT
  R
  GGACAAGCGC TTCAGAGCTT TTTGAGCAAC TATAATAATA TATTTTTTTA TTTTAATATA
  TTTCCCACCA GATTGTTATC TCAGTTCAAA TTGTGGAGTA TCTGAATGAG ATAGGTAGGG
  AGTATTCCCA GGCCCGCCTT TAGAGTGCTT AAAGCTCAGA AGCAGCAATC TTTTATATGG
  ATGTGGATTT GAAGGTGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45045633	mCV22631632	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31555538					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78637550 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	within coordinates
Cpgi461	CpG island 461	1204 bp distal
Rr29694	regulatory region 29694	within coordinates
Rr396121	regulatory region 396121	1835 bp downstream
Tssr7581	transcription start site region 7581	1965 bp downstream
Tssr7582	transcription start site region 7582	1944 bp downstream
Tssr12428	transcription start site region 12428	1551 bp upstream
Tssr12429	transcription start site region 12429	1524 bp upstream
Utp14b	UTP14B small subunit processome component	within coordinates