rs31555641 SNP Detail

Summary

• ID
  rs31555641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78456225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCGGTGG CGGCTGCAGC
  AGCGACCAAG TCGGACCTAG TCAGCTGAGG AGGTAGATAG CCTATGCCAC CAGCAGAGCC
  AAAGTGTGTG TGACCTTGGG ACCTAAGCCA GGAAAGGTCT CCAGGCCTCA GCCCCTCCCC
  GTTTCGAACT GAAGATGGCT GTCTAGTACA TGTGAGGATG GATCTAGCGG GACCCAAGAT
  R
  GACTTGAGGA CTGCACCCTA ATGTGTCGGA ATATATGGGA GACACATGAA GAAACTCAGG
  CCTTGGGTTA TGAGAGCCTG TGGTCCCAAG ATCTGACAAT GACTATCAGA CTTTAGCAGG
  GCTGCAGCCA GCCTGCCCTC TGGAGTCCTT AAGAGCAGAG GCTGGACTGA GAGTCAGAAA
  GCTTGGAGAT TGCCAGAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063787	NES12087831	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31555641					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063787	NES12087831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78456225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	within coordinates
Rac2	Rac family small GTPase 2	within coordinates
Rr312023	regulatory region 312023	within coordinates
Rr369961	regulatory region 369961	218 bp downstream
Rr404481	regulatory region 404481	629 bp upstream
Tssr131969	transcription start site region 131969	214 bp downstream
Tssr135250	transcription start site region 135250	1219 bp upstream
Tssr135251	transcription start site region 135251	643 bp downstream
Tssr135252	transcription start site region 135252	661 bp downstream
Tssr135253	transcription start site region 135253	684 bp downstream
Tssr135254	transcription start site region 135254	729 bp downstream
Tssr135255	transcription start site region 135255	1140 bp downstream
Tssr135256	transcription start site region 135256	1189 bp downstream