rs31555643 SNP Detail

Summary

• ID
  rs31555643
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78456339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATC TGACAATGAC TATCAGACTT
  W
  AGCAGGGCTG CAGCCAGCCT GCCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063789	NES12087832	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31555643					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063789	NES12087832	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78456339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	106 bp distal
Rac2	Rac family small GTPase 2	within coordinates
Rr312023	regulatory region 312023	within coordinates
Rr369961	regulatory region 369961	332 bp downstream
Rr404481	regulatory region 404481	515 bp upstream
Tssr131969	transcription start site region 131969	328 bp downstream
Tssr135250	transcription start site region 135250	1333 bp upstream
Tssr135251	transcription start site region 135251	529 bp downstream
Tssr135252	transcription start site region 135252	547 bp downstream
Tssr135253	transcription start site region 135253	570 bp downstream
Tssr135254	transcription start site region 135254	615 bp downstream
Tssr135255	transcription start site region 135255	1026 bp downstream
Tssr135256	transcription start site region 135256	1075 bp downstream