rs31555964 SNP Detail

Summary

• ID
  rs31555964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170979886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG GTTGTATGTC TGTATACCAC
  R
  TGTGTGCTTG GTGCTCCGAG AGGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45164105	mCV24422398	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss49750966	NES13034817	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	G	A		G	A	A		G	A	A	A		A
ss119995580	PARCsnp_1.11867	PARC_SEQ	INBRED	f	SNP							G		A
ss119997125	PARCsnp_1.00831	PARC_SEQ	INBRED	f	SNP							G		A
ss146155033	ENSMUSSNP4552562	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss320116731	CHEV_1_173082448	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31555964					SNP	A	A	G	G	G	A	G	G	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750966	NES13034817	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170979886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	1557 bp distal
Mpz	myelin protein zero	within coordinates
Rr396555	regulatory region 396555	1365 bp downstream
Rr423226	regulatory region 423226	1737 bp distal
Rr423227	regulatory region 423227	1594 bp distal
Rr423228	regulatory region 423228	754 bp distal
Sdhc	succinate dehydrogenase complex, subunit C, integral membrane protein	1677 bp upstream
Tssr14985	transcription start site region 14985	1708 bp upstream