rs31555966 SNP Detail

Summary

• ID
  rs31555966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170979038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACGAAC CAAACTCCCA
  CTGGCCAAAG ACAACGCTCT TTTGTTTATT TTTTCAGCGA TATGTGGGTG ACACCCACAG
  CCACAAGAGC CTAGGGGTGT GGAGGAGAAC CCGCTTTGAT TTATATATAC TGTATATCCA
  CGGTTTTGAG GATTCCAAGC ACAGAAATCA GTTGCAGAGT CTCTCGACTG AGGAAAGAGA
  R
  AAAGACATGA AATGAAATGT CAAAGTTCCT GACCCTGGGC GCTGAGGGGT GGCAAGGCAA
  AGGGAGAAAG AATAAAGGGG GGCAGCCCAG AGCAACTCTT ATTCTGTAGC AAATCTCTTT
  TTGAATGTAT TAATATTCAG ATCCCATTTA TATTTAGCAA TCTAGCTCTC TCCTGCCTTT
  TTCCTTTCAG GATTTAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49750969	NES13034812	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31555966					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750969	NES13034812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170979038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	709 bp distal
Mpz	myelin protein zero	within coordinates
Rr396555	regulatory region 396555	517 bp downstream
Rr423226	regulatory region 423226	889 bp distal
Rr423227	regulatory region 423227	746 bp distal
Rr423228	regulatory region 423228	within coordinates
Sdhc	succinate dehydrogenase complex, subunit C, integral membrane protein	829 bp upstream
Tssr14985	transcription start site region 14985	860 bp upstream