rs31555967 SNP Detail

Summary

• ID
  rs31555967
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170978979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTTGGCA TCCTTTCTCA
  CCACCTCCTT TAGGCCTGGC AATTCCAGGG TTTGAGCTGC AGCACGAACC AAACTCCCAC
  TGGCCAAAGA CAACGCTCTT TTGTTTATTT TTTCAGCGAT ATGTGGGTGA CACCCACAGC
  CACAAGAGCC TAGGGGTGTG GAGGAGAACC CGCTTTGATT TATATATACT GTATATCCAC
  S
  GTTTTGAGGA TTCCAAGCAC AGAAATCAGT TGCAGAGTCT CTCGACTGAG GAAAGAGAGA
  AAGACATGAA ATGAAATGTC AAAGTTCCTG ACCCTGGGCG CTGAGGGGTG GCAAGGCAAA
  GGGAGAAAGA ATAAAGGGGG GCAGCCCAGA GCAACTCTTA TTCTGTAGCA AATCTCTTTT
  TGAATGTATT AATATTCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49750970	NES13034810	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31555967					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750970	NES13034810	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170978979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	650 bp distal
Mpz	myelin protein zero	within coordinates
Rr396555	regulatory region 396555	458 bp downstream
Rr423226	regulatory region 423226	830 bp distal
Rr423227	regulatory region 423227	687 bp distal
Rr423228	regulatory region 423228	within coordinates
Sdhc	succinate dehydrogenase complex, subunit C, integral membrane protein	770 bp upstream
Tssr14985	transcription start site region 14985	801 bp upstream