rs31555969 SNP Detail

Summary

• ID
  rs31555969
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170978507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTAGCGTCG TTTGTCAAAG TTTTGGCCAA AATCGCCGAG
  TGGTTACCGT TAGTGCGTTT ACCTGCCCGA GTGTTTATTT TGTAGGGCTC GCTCTGCCAG
  S
  CAGCCACTTC TCCGGCTTAT TTATTCCCTG AGGATTTCAG AGGCTCACTT CACCCCCCTC
  CTTCCAAGTT GTCTTAAAAA TCCCCTAGTT AGCTGGCTGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ
ss49750973	NES13034807	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ
rs31555969					SNP	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750973	NES13034807	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170978507 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	178 bp distal
Mpz	myelin protein zero	within coordinates
Rr396555	regulatory region 396555	within coordinates
Rr423226	regulatory region 423226	358 bp distal
Rr423227	regulatory region 423227	215 bp distal
Rr423228	regulatory region 423228	within coordinates
Sdhc	succinate dehydrogenase complex, subunit C, integral membrane protein	298 bp upstream
Tssr14985	transcription start site region 14985	329 bp upstream