rs31555972 SNP Detail

Summary

• ID
  rs31555972
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170977729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCTGGA CAGAAAATGG
  ACACTTTAGA GAAAGGTGGT GACACCCACC CACCCAATTG TCCCGCTAAA ACCAAAATTA
  AAACAAAACA AAGTGGATTT CCTGGGCAAC ATTAAGAGAC CCACTGTGGA TGCTATTATT
  GACCTTGGCT TGGGAGGGAT GCATTAGGAT GCCCGACAGT TTCCACCGGT TGCTAGCAGG
  W
  TTGCCAGGAG TTAAAGCACC CAGTAGGTGC TCCAAGGAGC CCCTCCCTCT ACAATCCCTA
  AGTCCCCCCA AAACTGCAGG CCTAGGGGCC CGCTGATCTC GAAGTTACAG CAGCTTTTTG
  GGGCCACAAG AGCAGTTTTC GAAGAGGCTT TAGAGGTGGG CGAGGCAGAA ACAATGACAG
  CCGCGCCACT CGGCCACACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49750977	NES13034803	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31555972					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750977	NES13034803	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170977729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	167 bp proximal
Mpz	myelin protein zero	553 bp upstream
Rr396555	regulatory region 396555	491 bp upstream
Rr423226	regulatory region 423226	within coordinates
Rr423227	regulatory region 423227	421 bp proximal
Rr423228	regulatory region 423228	564 bp proximal
Sdhc	succinate dehydrogenase complex, subunit C, integral membrane protein	within coordinates
Tssr14985	transcription start site region 14985	432 bp downstream