rs31556339 SNP Detail

Summary

• ID
  rs31556339
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78457128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTACCCGG CAGTGAGGAG
  CAGCACCCCA GCTCAAGAGG CGGGAGGAAA CGGAAGAGGA ACTTACCCAA GCTGCTGCCC
  CACAGCCTTG AGGGGGTGGA GCATGCGGTC TGGAAGAGGA CCTGGGGCCC CACAGGTGCT
  AGGTTGGGCC CAGGCCACCA AGGGCACTTG ACTTAGGCTC CAAAGGGAAC CCAGGCACCC
  W
  AGAGAATTGA AGATTCACTT CCTAAGCCAG GGCAGGGACA AAGTTGCTCT CGAAGAATCT
  GCATCCTCCA AGAAGTCAGT TGGCCTGACT CCCATGGGCA AACACTTGAG TGCCTACTGT
  GTATCAGGCA TTGTGTTGGG AGCTGGTGAC TCTAAAATGC AGGAAGCCAG GTTGTCCTGG
  AGTTCCTGCT CTGTAGAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063795	NES12087837	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31556339					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063795	NES12087837	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78457128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	895 bp distal
Gm36738	predicted gene, 36738	1483 bp downstream
Rac2	Rac family small GTPase 2	145 bp upstream
Rr307919	regulatory region 307919	1873 bp proximal
Rr312023	regulatory region 312023	within coordinates
Rr369961	regulatory region 369961	1121 bp downstream
Rr404481	regulatory region 404481	within coordinates
Tssr131969	transcription start site region 131969	1117 bp downstream
Tssr135251	transcription start site region 135251	253 bp upstream
Tssr135252	transcription start site region 135252	238 bp upstream
Tssr135253	transcription start site region 135253	178 bp upstream
Tssr135254	transcription start site region 135254	138 bp upstream
Tssr135255	transcription start site region 135255	237 bp downstream
Tssr135256	transcription start site region 135256	286 bp downstream