rs31556341 SNP Detail

Summary

• ID
  rs31556341
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78457205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACAGCC TTGAGGGGGT
  GGAGCATGCG GTCTGGAAGA GGACCTGGGG CCCCACAGGT GCTAGGTTGG GCCCAGGCCA
  CCAAGGGCAC TTGACTTAGG CTCCAAAGGG AACCCAGGCA CCCTAGAGAA TTGAAGATTC
  ACTTCCTAAG CCAGGGCAGG GACAAAGTTG CTCTCGAAGA ATCTGCATCC TCCAAGAAGT
  S
  AGTTGGCCTG ACTCCCATGG GCAAACACTT GAGTGCCTAC TGTGTATCAG GCATTGTGTT
  GGGAGCTGGT GACTCTAAAA TGCAGGAAGC CAGGTTGTCC TGGAGTTCCT GCTCTGTAGA
  GAAGGCAAAC CACACCACAG GTGCTGTGAG CAAGGCAGGA GACATGGGCC AAGGGAGAGC
  TACAGAGTGA CCTCAGAGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48063797	NES12087838	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31556341					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063797	NES12087838	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78457205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	972 bp distal
Gm36738	predicted gene, 36738	1406 bp downstream
Rac2	Rac family small GTPase 2	222 bp upstream
Rr307919	regulatory region 307919	1796 bp proximal
Rr312023	regulatory region 312023	within coordinates
Rr369961	regulatory region 369961	1198 bp downstream
Rr404481	regulatory region 404481	51 bp downstream
Tssr131969	transcription start site region 131969	1194 bp downstream
Tssr135251	transcription start site region 135251	330 bp upstream
Tssr135252	transcription start site region 135252	315 bp upstream
Tssr135253	transcription start site region 135253	255 bp upstream
Tssr135254	transcription start site region 135254	215 bp upstream
Tssr135255	transcription start site region 135255	160 bp downstream
Tssr135256	transcription start site region 135256	209 bp downstream