rs31556343 SNP Detail

Summary

• ID
  rs31556343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78457433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGTGCC TACTGTGTAT
  CAGGCATTGT GTTGGGAGCT GGTGACTCTA AAATGCAGGA AGCCAGGTTG TCCTGGAGTT
  CCTGCTCTGT AGAGAAGGCA AACCACACCA CAGGTGCTGT GAGCAAGGCA GGAGACATGG
  GCCAAGGGAG AGCTACAGAG TGACCTCAGA GTCACCAGCA GGGAAAACTG GTGGCTATGA
  Y
  GTGTGATGTC AAACAAAGTT GGCCCGGGGG GGGGGGGTGC TGCCTAAGCA AGGGCCAGTG
  TGTAGAGAGA AGGCAAAGGA GGGGGAGGGA AAGAGAGAAG GGAAGAGGTA GAGGAGAGGG
  GAGAAAAGGA GGAAGGGGAG GAAGGGGGGA AATTGGGAGG GGAGGAAGTG GAGGAAAAGG
  GGGAGGAGGA GGAAGGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063799	NES12087729	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31556343					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063799	NES12087729	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78457433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	1200 bp distal
Gm36738	predicted gene, 36738	1178 bp downstream
Rac2	Rac family small GTPase 2	450 bp upstream
Rr307919	regulatory region 307919	1568 bp proximal
Rr312023	regulatory region 312023	32 bp distal
Rr369961	regulatory region 369961	1426 bp downstream
Rr404481	regulatory region 404481	279 bp downstream
Tssr131969	transcription start site region 131969	1422 bp downstream
Tssr135251	transcription start site region 135251	558 bp upstream
Tssr135252	transcription start site region 135252	543 bp upstream
Tssr135253	transcription start site region 135253	483 bp upstream
Tssr135254	transcription start site region 135254	443 bp upstream
Tssr135255	transcription start site region 135255	29 bp upstream
Tssr135256	transcription start site region 135256	4 bp upstream