rs31556985 SNP Detail

Summary

• ID
  rs31556985
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78457786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGAGAGGA GGAGGAGGAG GAGGAGGAGT GAGAGGAGGA
  GGAGGAGGAG GAGGAGGAGG AGGAGGAGGA GGAGGAGGAG GAGGAGGAGG AGGAGGAAGA
  K
  TCAGGGACAG ATGCAGTAGA GCAAGCTGGT AGAAGTTTGG CAAGTCCAAA CCTTCTCACA
  GCATGGTGCA ATCTAAGCTT TCAGGAAGCT GAGACAAAGG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48063801	NES12087724	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31556985					SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063801	NES12087724	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78457786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	1553 bp distal
Gm36738	predicted gene, 36738	825 bp downstream
Rac2	Rac family small GTPase 2	803 bp upstream
Rr307919	regulatory region 307919	1215 bp proximal
Rr312023	regulatory region 312023	385 bp distal
Rr369961	regulatory region 369961	1779 bp downstream
Rr404481	regulatory region 404481	632 bp downstream
Tssr131969	transcription start site region 131969	1775 bp downstream
Tssr135251	transcription start site region 135251	911 bp upstream
Tssr135252	transcription start site region 135252	896 bp upstream
Tssr135253	transcription start site region 135253	836 bp upstream
Tssr135254	transcription start site region 135254	796 bp upstream
Tssr135255	transcription start site region 135255	382 bp upstream
Tssr135256	transcription start site region 135256	357 bp upstream