rs31556989 SNP Detail

Summary

• ID
  rs31556989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78458075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGACAAA GGGATTGCTG
  GGAGCTTGAG TCCAGGATTC AGAGTGAGAG TTCCAAGGCA GCCAGAGCCA TCGAGCGATA
  CAGCAAGATC CTAGCTGGGA AACCACTCCA AACCGAAAAT CCTACCTACA AACTGTCGTA
  GGCTTCTTGC CGTTTTGATG ATATCAACTA CACTCGCCTT GTGTTGGGCA TTTGTGTTTA
  Y
  AAGTGTTTGG TTGGGTGTTT GTGTTTGCAG GTGTTTTGTT GGGCATTTGT GTTTTTAGTT
  GTTTATTGGA CTTTTGGGTT TCCTATTACA CAAGTTACTA TTTGTGTATT TGTCCATTTC
  TCTACTGGAG TATTTTTTCC CCTCATATTT ATTTGGAGAA GTTCGGTGTT TGATTTTTCA
  AGTGTGAATT GCTATAACCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063805	NES12087709	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31556989					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063805	NES12087709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78458075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7294	CpG island 7294	1842 bp distal
Gm36738	predicted gene, 36738	536 bp downstream
Rac2	Rac family small GTPase 2	1092 bp upstream
Rr307919	regulatory region 307919	926 bp proximal
Rr312023	regulatory region 312023	674 bp distal
Rr404481	regulatory region 404481	921 bp downstream
Tssr135251	transcription start site region 135251	1200 bp upstream
Tssr135252	transcription start site region 135252	1185 bp upstream
Tssr135253	transcription start site region 135253	1125 bp upstream
Tssr135254	transcription start site region 135254	1085 bp upstream
Tssr135255	transcription start site region 135255	671 bp upstream
Tssr135256	transcription start site region 135256	646 bp upstream