rs31557139 SNP Detail

Summary

• ID
  rs31557139
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:35700295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTACAA CTTAGGTTAG
  ACCACATATC ACAATAAAAC TCAACCTTGG GGCTAGAGAG ATGGCTTAGT GGTTAAGAGC
  ACTGACTGCT CTTCTGAAGG TCCTGAGTTC AAATCCCAGC AACCACATGG TGTCTCACAA
  CCATCCATAA TGAAGACAGC TATGGCGTAT TTACATATAA TAAATAAATC TTAAAAAAAA
  M
  CAAAACTCAA CCTTGACTGA GCTACCTCTA TAATTCAGTT AGTACAACAA TGTCTTGAAC
  TGTGAGGATG TGAATAGACA CTTAGCAGGC AGGCTTGGTA AGTAAATCTA CAGAGACCTG
  GGATGGTCAC CTCTTAACAG GGGAAAACTG AGACTCTAGT ACACTGCTGC GTCTGTTGAG
  CACGATGAGT GTCCTTTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss39301925	mCV23384090	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31557139					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:35700295 () rs orientation: forward

Symbol	Name	Function Class
Rr647	regulatory region 647	1220 bp proximal
Rr309492	regulatory region 309492	1076 bp proximal
Vps13b	vacuolar protein sorting 13B	within coordinates