rs31557235 SNP Detail

Summary

• ID
  rs31557235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172301483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATAGTGTCT CACTATGTAG CCCTGGTTGG CTTGAAACTC
  AGAGCAATCC ACCTGCTTCT GCCTTCTGAG TGTTGATATT AAAATGTATG TGCCACTATT
  Y
  TTGACCTGAA ACAGTATTTT AAGAGAGAAT TAGCCTTATC TTGCTGTCCA GGCAGAGGGC
  CTATGTGATG TCCCTCTCAA TTCATGTCAC AACAAAAACA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49751711	NES13028079	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31557235					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751711	NES13028079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172301483 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	107 bp upstream
Gm70809	predicted gene, 70809	within coordinates
Gm70814	predicted gene, 70814	66 bp downstream
Rr396588	regulatory region 396588	578 bp downstream
Rr423578	regulatory region 423578	1150 bp proximal
Slamf9	SLAM family member 9	1444 bp upstream
Tssr10198	transcription start site region 10198	1455 bp upstream
Tssr10199	transcription start site region 10199	1471 bp upstream
Tssr10200	transcription start site region 10200	1511 bp upstream
Tssr15219	transcription start site region 15219	1249 bp downstream