rs31557236 SNP Detail

Summary

• ID
  rs31557236
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172301349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTC TAATTTACAC CCTTCTTTAA
  R
  TTACTGTCAT TATTATTGTT GTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss49751712	NES13028089	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A		A	G
ss320125586	CHEV_1_174403913	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs31557236					SNP	A	A	A	A	A	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751712	NES13028089	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172301349 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	241 bp upstream
Gm70809	predicted gene, 70809	within coordinates
Gm70814	predicted gene, 70814	200 bp downstream
Rr396588	regulatory region 396588	444 bp downstream
Rr423578	regulatory region 423578	1284 bp proximal
Slamf9	SLAM family member 9	1578 bp upstream
Tssr10198	transcription start site region 10198	1589 bp upstream
Tssr10199	transcription start site region 10199	1605 bp upstream
Tssr10200	transcription start site region 10200	1645 bp upstream
Tssr15219	transcription start site region 15219	1383 bp downstream