rs31557238 SNP Detail

Summary

• ID
  rs31557238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172300840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAT AGTCTAGTCT ATCAAAGCAA
  R
  GAAAACAGTA TCAGGAGCCT GAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49751714	NES13028090	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		G	A	A	A		G	A	A	G		G
ss120011331	PARCsnp_1.19744	PARC_SEQ	INBRED	f	SNP								G		A
ss120014403	PARCsnp_1.09772	PARC_SEQ	INBRED	f	SNP								G		A
ss146193160	ENSMUSSNP3175908	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss320125579	CHEV_1_174403404	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31557238					SNP	A	A	A	A	A	G	A	G	G	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751714	NES13028090	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172300840 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	750 bp upstream
Gm70809	predicted gene, 70809	within coordinates
Gm70814	predicted gene, 70814	709 bp downstream
Rr396588	regulatory region 396588	within coordinates
Rr423578	regulatory region 423578	1793 bp proximal
Tssr15219	transcription start site region 15219	1892 bp downstream