rs31557843 SNP Detail

Summary

• ID
  rs31557843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44465186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGACTTCTA AAGATTCTAC GGGAAGCTCC GCCCACCCTT
  CTGTCTGTCA CAGTCAGTTC CCGTCCCCCA CTAGCAAGTC CCTAGAGGCC CCGCCCCTGT
  R
  GTGCTAGTGC TAACTCTTTC TTAAAGGTGT TCCTAAAGCC TTTCCTGTCA GTTTAAGCCA
  GTCCCCGCCC CAGCAGGTGT CTGATTGGAG GGAAGTTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46044957	mCV27573931	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss149123024	ENSMUSSNP4399936	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss322199701	CHEV_7_52071132	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31557843					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44465186 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	within coordinates
Cpgi18994	CpG island 18994	within coordinates
Il4i1b	interleukin 4 induced 1B	608 bp upstream
Nup62	nucleoporin 62	326 bp upstream
Rr400297	regulatory region 400297	10 bp upstream
Rr646219	regulatory region 646219	within coordinates
Rr646220	regulatory region 646220	645 bp proximal
Rr646221	regulatory region 646221	802 bp proximal
Tssr66426	transcription start site region 66426	167 bp upstream
Tssr66427	transcription start site region 66427	528 bp upstream
Tssr66428	transcription start site region 66428	561 bp upstream
Tssr66429	transcription start site region 66429	602 bp upstream
Tssr66430	transcription start site region 66430	624 bp upstream
Tssr72230	transcription start site region 72230	105 bp upstream
Tssr72231	transcription start site region 72231	80 bp upstream
Tssr72232	transcription start site region 72232	147 bp downstream
Tssr72233	transcription start site region 72233	824 bp downstream
Tssr72234	transcription start site region 72234	1192 bp downstream